BIOC 219/ BISC 219 - Genetics w/Lab Genetics with Laboratory

The goal of the course is to develop an understanding of the fundamental principles of genetics at the molecular, cellular, organismal, and population levels. The course establishes a link between the generation of genetic variants through mutation and recombination, their patterns of inheritance, interactions between genes to produce complex phenotypes, and the maintenance of such genetic variation in natural populations. The course also explores principles of genome organization and the mechanisms that regulate gene expression. Other topics include: DNA sequencing and the use of genomic data to address questions in genetics, comparing and contrasting genetic regulation strategies across the three domains of life, and exploring experimental approaches for addressing genetic questions. Laboratory investigation will expose students to the fundamentals of genetics including transmission, molecular, and computational techniques for genetic analysis. Students must attend lab during the first week in order to continue in the course. During certain weeks, students are required to come in outside of scheduled lab time for approximately one hour 3-4 days after the scheduled lab. Please plan your schedule accordingly.

This course has a required co-requisite laboratory: BIOC 219L/BISC 219L.

Units
1.25
Typically offered
Fall
Distributions
Fall, LAB - Natural and Physical Sciences Laboratory, NPS - Natural and Physical Sciences, Summer
Also listed as
BIOC 219 - Genetics w/Lab
Notes
<p>:Notes:</p><p>:Prerequisites: BISC 110, BISC 110P, BISC 112, BISC 112Y or BISC 116. One unit of college chemistry is recommended. Not open to First-Year students.</p><p>:Instructor: Biller, Sequeira</p>

BIOC 219L/ BISC 219L - Lab: Genetics Laboratory: Genetics

This is a required co-requisite laboratory for BIOC 219/BISC 219.

The grading option chosen for the lecture (BIOC 219/BISC 219) - either Letter Grade or Credit/Non Credit - will apply to the lab as well; the final grade is a single unified grade for both lecture and lab and is based on the grading option you choose for the lecture section.

Units
0
Typically offered
Fall
Distributions
Fall, Summer, TR - Exclude from Transcript
Also listed as
BIOC 219L - Lab: Genetics
Notes
<p>:Notes:</p><p>:Prerequisites:</p><p>:Instructor: Beers, Biller, Carmell</p>

BIOC 220/ BISC 220 - Cell Biology w/Lab Cell Biology with Laboratory

Examines structure-function relationships in eukaryotic cells. We will explore the operation and regulation of molecular mechanisms that carry out processes central to life. Considerable emphasis is placed on experimental approaches for investigating the following topics: protein structure and function, biological membranes and transport, cytoskeletal assembly and function, protein biogenesis and trafficking, cell communication and signaling, the cell cycle, and intercellular interactions. Laboratory investigations will provide students with experience in classical and modern approaches to examine and quantify cellular processes.

This course has a required co-requisite Laboratory - BIOC 220L/BISC 220L.

Students must attend lab during the first week in order to continue in the course.

Units
1.25
Typically offered
Spring
Distributions
LAB - Natural and Physical Sciences Laboratory, NPS - Natural and Physical Sciences, Spring
Also listed as
BIOC 220 - Cell Biology w/Lab
Notes
<p>:Notes:</p><p>:Prerequisites: One of the following (BISC 110, BISC 110P, BISC 112, or BISC 112Y) and two units of college chemistry; or  BISC 116 and CHEM 116 and one unit of college chemistry. One semester of organic chemistry is recommended. Not open to First-Year students.</p><p>:Instructor: Darling, Goss</p>

BIOC 220L/ BISC 220L - Lab: Cell Biology Laboratory: Cell Biology

This is a required co-requisite laboratory for BIOC 220/BISC 220.
Units
0
Typically offered
Spring
Distributions
Spring, TR - Exclude from Transcript
Also listed as
BIOC 220L - Lab: Cell Biology
Notes
<p>:Notes:</p><p>:Prerequisites: One of the following (BISC 110, BISC 110P, BISC 112, or BISC 112Y) and two units of college chemistry; or BISC 116 and CHEM 116 and one unit of college chemistry. One semester of organic chemistry is recommended. Not open to First-Year students.</p><p>:Instructor: Darling, Goss, Okumura, Roden</p>

BIOC 223/ CHEM 223 - Fundamentals of Biochem w/lab Fundamentals of Biochemistry with Laboratory

This course brings together the fundamental multidisciplinary concepts governing life at the molecular level and opens a gateway to advanced biochemistry offerings. Grounded in an understanding of aqueous equilibria, thermodynamic, kinetic, and spectroscopic principles, the course will emphasize the structure and function of proteins, nucleic acids, carbohydrates, and lipids. The laboratory introduces modern laboratory techniques for the study of biomolecules and develops experimental design and critical data analysis skills. The laboratory component can be of particular value to students planning or engaged in independent research and those considering graduate level work related to biochemistry. This course counts toward Chemistry or Biochemistry major requirements.

This course has a required co-requisite laboratory - BIOC 223L/CHEM 223L.

Units
1.25
Typically offered
Spring; Fall
Distributions
BIOC - Biochemistry Program, Fall, LAB - Natural and Physical Sciences Laboratory, NPS - Natural and Physical Sciences, Spring
Also listed as
BIOC 223 - Fundamentals of Biochem w/lab
Notes
<p>:Notes:</p><p>:Prerequisites: (CHEM 205 or CHEM 120) and CHEM 211 and one of the following (BISC 110, BISC 110P, BISC 112, BISC 112Y, BISC 116, CHEM 212). Open only to Biochemistry or Chemistry majors, or by permission of the instructor.</p><p>:Instructor: Elmore, Hall, Tantama</p>

BIOC 223L/ CHEM 223L - Lab: Fundamentals of Biochemistry Laboratory: Fundamentals of Biochemistry

This is a required co-requisite laboratory for BIOC 223L/CHEM 223L.
Units
0
Typically offered
Spring; Fall
Distributions
Fall, Spring, TR - Exclude from Transcript
Also listed as
BIOC 223L - Lab: Fundamentals of Biochemistry
Notes
<p>:Notes:</p><p>:Prerequisites: (CHEM 205 or CHEM 120) and CHEM 211 and one of the following (BISC 110, BISC 110P, BISC 112, BISC 112Y, BISC 116, CHEM 212), and permission of the instructor.</p><p>:Instructor: Elmore, Hall</p>

BIOC 227/ CHEM 227 - Principles of Biochemistry Principles of Biochemistry

A survey of the chemical foundations of life processes, with focus on theory and applications relevant to medicine. Topics include bioenergetics, metabolism, and macromolecular structure. Essential skills such as data analysis and understanding of the primary literature will be approached through in-class discussions and application to current biomedical problems. This course is suitable for students wanting an overview of biochemistry, but it will not contain the experimental introduction to biochemical methods and laboratory instrumentation required for the Chemistry and Biochemistry majors.

Units
1
Typically offered
Spring; Fall
Distributions
Fall, NPS - Natural and Physical Sciences, Spring
Also listed as
BIOC 227 - Principles of Biochemistry
Notes
<p>:Notes: Does not count toward the minimum major in Chemistry.</p><p>:Prerequisites: (CHEM 205 or CHEM 120) and CHEM 211 and one of the following (BISC 110, BISC 110P, BISC 112, BISC 112Y, BISC 116). Not open to students who have completed BIOC 223/CHEM 223.</p><p>:Instructor: Woodford</p>

BIOC 250 - Research or Individual Study Research or Individual Study

Units
1
Typically offered
Spring; Fall
Distributions
Fall, Spring
Notes
<p>:Notes: Mandatory Credit/Non Credit.</p><p>:Prerequisites: Permission of the instructor.</p><p>:Instructor:</p>

BIOC 250H - Research or Individual Study Research or Individual Study

Units
0.5
Typically offered
Spring; Fall; Winter
Distributions
Fall, Spring, Winter
Notes
<p>:Notes: Mandatory Credit/Non Credit.</p><p>:Prerequisites: Permission of the instructor.</p><p>:Instructor:</p>

BIOC 320/ CHEM 320 - Adv Biochem Lab Advanced Biochemistry Laboratory

An intensive laboratory course offering a multiweek independent team research project and training in experimental applications of physical chemistry and biochemistry. Topics will include spectroscopy and chemical thermodynamics of biomolecules. This course will emphasize independent hypothesis development and experimental design skills as well as public presentation of results. Students will read primary literature, construct a research proposal, develop their own laboratory protocols manual, conduct experiments using a variety of instrumentation, and present their research in a public poster session. One class period per week plus one lab and mandatory weekly meetings with the instructor.

This course has a required co-requisite laboratory - BIOC 320L/CHEM 320L.

Units
1
Typically offered
Spring
Distributions
BIOC - Biochemistry Program, CHEM - Chemistry Department, LAB - Natural and Physical Sciences Laboratory, Not Offered, NPS - Natural and Physical Sciences, SPK - Speaking Intensive, Spring
Also listed as
BIOC 320 - Adv Biochem Lab
Notes
<p>:Notes: <span>Ann E. Maurer &#39;51 Speaking Intensive Course.</span></p><p>:Prerequisites: BIOC 223/CHEM 223.</p><p>:Instructor: Oakes</p>

BIOC 320L/ CHEM 320L - Lab: Advanced Biochemistry Laboratory: Advanced Biochemistry

This is a required co-requisite laboratory of BIOC 320/CHEM 320.
Units
0
Typically offered
Spring
Distributions
Not Offered, Spring, TR - Exclude from Transcript
Also listed as
BIOC 320L - Lab: Advanced Biochemistry
Notes
<p>:Notes:</p><p>:Prerequisites: BIOC 223/CHEM 223.</p><p>:Instructor: Oakes</p>

BIOC 323/ CHEM 323 - Sem: Adv Seminar in Biochemistry Seminar: Advanced Seminar in Biochemistry

In-depth consideration of the functions of biomolecules and macromolecular assemblies. Topics will focus on the core concepts described by the American Society of Biochemistry and Molecular Biology: bioenergetics; structure-function relationships; information storage and flow; scientific discovery and communication. The class will include shared reading, analysis, and discussion of research based on the primary biochemical literature. Throughout the semester, each student will develop an independent research proposal.

Units
1
Typically offered
Fall
Distributions
Fall, Not Offered, NPS - Natural and Physical Sciences
Also listed as
BIOC 323 - Sem: Adv Seminar in Biochemistry, BIOC 323 - Seminar: Chemical Biology
Notes
<p>:Notes:</p><p>:Prerequisites: BIOC 223/CHEM 223 or BIOC 227/CHEM 227, or permission of instructor.</p><p>:Instructor: Woodford</p>

BIOC 324/ CHEM 324 - CSPW: Biochem for Soc Prob Calderwood Seminar in Public Writing: Can Biochemistry Help Address Societal Problems?

Researchers increasingly attempt to harness biochemical approaches as a way to address pressing societal problems. For example, recent work has focused on topics including the effective production of biofuels, remediation of environmental pollutants and developing new treatments for antibiotic resistant pathogens. In this course, juniors and seniors will explore contemporary research aimed at solving these problems through readings in the primary literature, invited lectures, interviewing researchers and developing independent research proposals. Students will analyze and interpret research findings through weekly writing assignments targeted towards broad audiences, such as research summaries for the scientific press, textbook sections, executive summaries and proposals accessible to non-specialists. Class sessions will be structured as workshops to analyze core chemical and biological concepts and provide structured critiques of writing assignments.

Units
1
Typically offered
Every three years
Distributions
CSPW - Calderwood Seminar in Public Writing, Fall, Not Offered, NPS - Natural and Physical Sciences, Spring
Also listed as
BIOC 324 - CSPW: Biochem for Soc Prob
Notes
<p>:Notes:</p><p>:Prerequisites: BIOC 223/CHEM 223 or BIOC 227/CHEM 227 or BIOC 220/BISC 220 or (CHEM 205 and CHEM 211 and (BISC 110 or BISC 112 or BISC 116)), <span>or permission of the instructor. </span></p><p>:Instructor: Elmore</p>

BIOC 325/ CHEM 325 - Sem: Biosensors & Optogenetics Seminar: Biosensors & Optogenetics

Biosensors and optogenetics are important tools used to understand the physiology of living systems across the molecular, cellular, tissue, and organismal levels. Luminescent biosensors emit light during a measurement while optogenetics are activated by light to control and manipulate signaling and metabolism in living cells. In this course, students will explore the chemistry and biology of these tools, focusing on the principles of their design, strategies for their construction, and their applications in the life and physical sciences. Students will engage the subject matter with group work, peer-to-peer editing, and individual assignments through a combination of active-learning lectures, current literature analysis, and oral presentations. The course will culminate in the writing and presentation of an NIH-style original research proposal. This course will provide foundations for thinking about protein engineering as well as hypothesis-driven biological questions, and it is appropriate for students across the spectrum of chemical, physical, and biological interests.

Units
1
Typically offered
Spring
Distributions
Not Offered, NPS - Natural and Physical Sciences, Spring
Also listed as
BIOC 325 - Sem: Biosensors & Optogenetics
Notes
<p>:Notes:</p><p>:Prerequisites: BIOC 223/CHEM 223 or BIOC 227/CHEM 227 or BIOC 220/BISC 220 or (CHEM 205 and CHEM 212 and (BISC 110 or BISC 112 or BISC 116))</p><p>:Instructor: Tantama</p>

BIOC 331/ CHEM 331 - Biophys Chem Physical Chemistry of Biological Systems: The Fundamental Models of Biological Molecules and Processes

Provides a survey of fundamental principles in physical chemistry and how they relate specifically to the study of biological molecules and processes. Emphasis is placed on empowering students to understand, evaluate, and use models as approximations for the biomolecular world. Models are mathematically represented and provide both qualitative and quantitative insight into biologically relevant systems. Commonly used experimental techniques such as spectroscopy and calorimetry are explained from first principles with quantum mechanical and statistical mechanical models, and applications such as molecular imaging and metabolism are explained through physical models such as molecular mechanics and dynamics.

Units
1
Typically offered
Spring
Distributions
Fall, MM - Mathematical Modeling and Problem Solving, NPS - Natural and Physical Sciences, Spring
Also listed as
BIOC 331 - Biophys Chem
Notes
<p>:Notes: Does not count toward the chemistry major but counts toward the biochemistry major and the chemistry minor. Students are strongly encouraged to complete one course in physics in addition to the stated prerequisites before enrolling.</p><p>:Prerequisites: BIOC 223/CHEM 223 and MATH 116 or equivalent.</p><p>:Instructor: Kim</p>

BIOC 350 - Research or Individual Study Research or Individual Study

Units
1
Typically offered
Spring; Fall
Distributions
Fall, Spring
Notes
<p>:Notes: Mandatory Credit/Non Credit.</p><p>:Prerequisites: Permission of the instructor. Open to juniors and seniors.</p><p>:Instructor:</p>

BIOC 350H - Research or Individual Study Research or Individual Study

Units
0.5
Typically offered
Spring; Fall; Winter
Distributions
Fall, Spring, Winter
Notes
<p>:Notes: Mandatory Credit/Non Credit.</p><p>:Prerequisites: Permission of the instructor. Open to juniors and seniors.</p><p>:Instructor:</p>

BIOC 355 - Thesis Research Thesis Research

The first course in a two-semester investigation of a significant research problem, culminating in the preparation of a thesis and defense of that thesis before a committee of faculty from the Biochemistry program. Students will discuss their research progress informally with faculty and student colleagues and gain familiarity with contemporary research through presentations by outside seminar speakers. This route does not lead to departmental honors.

Units
1
Typically offered
Spring; Fall
Distributions
Fall, Spring
Notes
<p>:Notes:</p><p>:Prerequisites: <span>Open only to Seniors with permission of the instructor.</span></p><p>:Instructor:</p>

BIOC 360 - Senior Thesis Research Senior Thesis Research

Units
1
Typically offered
Spring; Fall
Distributions
Fall, Spring
Notes
<p>:Notes: Students enroll in Senior Thesis Research (360) in the first semester and carry out independent work under the supervision of a faculty member. If sufficient progress is made, students may continue with Senior Thesis (370) in the second semester.</p><p>:Prerequisites: Permission of the department.</p><p>:Instructor:</p>

BIOC 365 - Thesis Thesis

The second course in a two-semester investigation of a significant research problem, in the preparation of a thesis and defense of that thesis before a committee of faculty from the Biochemistry program. Students will discuss their research progress informally with faculty and student colleagues and gain familiarity with contemporary research through presentations by outside seminar speakers. This route does not lead to departmental honors.

Units
1
Typically offered
Spring; Fall
Distributions
Fall, Spring
Notes
<p>:Notes:</p><p>:Prerequisites: <span>BIOC 355 and permission of the department.</span></p><p>:Instructor:</p>

BIOC 370 - Senior Thesis Senior Thesis

Units
1
Typically offered
Spring; Fall
Distributions
Fall, Spring
Notes
<p>:Notes: Students enroll in Senior Thesis Research (360) in the first semester and carry out independent work under the supervision of a faculty member. If sufficient progress is made, students may continue with Senior Thesis (370) in the second semester.</p><p>:Prerequisites: BIOC 360 and permission of the department.</p><p>:Instructor:</p>